diff --git a/testing/project_setup/cxx_sonargraph_manual/checklist.txt b/testing/project_setup/cxx_sonargraph_manual/checklist.txt
index 37264939..b54983ac 100644
--- a/testing/project_setup/cxx_sonargraph_manual/checklist.txt
+++ b/testing/project_setup/cxx_sonargraph_manual/checklist.txt
@@ -6,7 +6,7 @@
 * Click "Add Source Group"
 * Select "C++" -> C/C++ from Sonargraph"
 * Click "Next"
-* Pick "Test.sonargraph/system.sonargraph" at "Compilation Database"
+* Pick "Test.sonargraph/system.sonargraph" at "Sonargraph Project"
 * Click "show source files" button
 * Validate "Source Files" list contains "src/main.cpp"
 * Click "OK"
diff --git a/testing/project_setup/java_sonargraph_manual/1_setup.sh b/testing/project_setup/java_sonargraph_manual/1_setup.sh
new file mode 100644
index 00000000..7e4992e7
--- /dev/null
+++ b/testing/project_setup/java_sonargraph_manual/1_setup.sh
@@ -0,0 +1,19 @@
+#!/bin/bash
+
+# get absolute path to parent directory of script
+MY_PATH=`dirname "$0"`
+if [[ "${MY_PATH}" != *\\* ]]
+then
+	cd $MY_PATH
+	MY_PATH=`pwd`
+fi
+MY_PATH="${MY_PATH//\\//}"
+
+SRC_PATH=$MY_PATH/data
+WORKING_COPY_PATH=$MY_PATH/working_copy
+
+mkdir -p $WORKING_COPY_PATH
+
+cp -a $SRC_PATH/. $WORKING_COPY_PATH
+
+echo "Setup Complete"
diff --git a/testing/project_setup/java_sonargraph_manual/2_update.sh b/testing/project_setup/java_sonargraph_manual/2_update.sh
new file mode 100644
index 00000000..efe9c16d
--- /dev/null
+++ b/testing/project_setup/java_sonargraph_manual/2_update.sh
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+# get absolute path to parent directory of script
+MY_PATH=`dirname "$0"`
+if [[ "${MY_PATH}" != *\\* ]]
+then
+	cd $MY_PATH
+	MY_PATH=`pwd`
+fi
+MY_PATH="${MY_PATH//\\//}"
+
+WORKING_COPY_PATH=$MY_PATH/working_copy
+
+echo "" >> $WORKING_COPY_PATH/src/foo/Bar.java
+
+echo "Update Complete"
+
diff --git a/testing/project_setup/java_sonargraph_manual/3_teardown.sh b/testing/project_setup/java_sonargraph_manual/3_teardown.sh
new file mode 100644
index 00000000..0877a78a
--- /dev/null
+++ b/testing/project_setup/java_sonargraph_manual/3_teardown.sh
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+# get absolute path to parent directory of script
+MY_PATH=`dirname "$0"`
+if [[ "${MY_PATH}" != *\\* ]]
+then
+	cd $MY_PATH
+	MY_PATH=`pwd`
+fi
+MY_PATH="${MY_PATH//\\//}"
+
+WORKING_COPY_PATH=$MY_PATH/working_copy
+
+rm -rf $WORKING_COPY_PATH
+
+echo "Teardown Complete"
diff --git a/testing/project_setup/java_sonargraph_manual/checklist.txt b/testing/project_setup/java_sonargraph_manual/checklist.txt
new file mode 100644
index 00000000..52096fc6
--- /dev/null
+++ b/testing/project_setup/java_sonargraph_manual/checklist.txt
@@ -0,0 +1,33 @@
+* Run "1_setup.sh"
+* Start up Sourcetrail
+* Click "New Project"
+* Enter a project name
+* Set "./working_copy" as project location
+* Click "Add Source Group"
+* Select "Java" -> Java from Sonargraph"
+* Click "Next"
+* Pick "Test.sonargraph/system.sonargraph" at "Sonargraph Project"
+* Click "show source files" button
+* Validate list contains 4 source files
+* Click "OK"
+* Click "Next"
+* Click "Next"
+* Click "Create"
+* Validate "All files" is the only option selectable
+* Click "Start"
+* Validate Project indexed without error
+* Click "OK"
+* Press "Refresh" button
+* Validate "Updated files" is selected
+* Validate "source files to index" shows "0"
+* Click "Cancel"
+* Run "2_update.sh"
+* Press "Refresh" button
+* Validate "Files to clear" shows "1"
+* Validate "source files to index" shows "1"
+* Click "Start"
+* Validate Project indexed without error
+* Click "OK"
+* Close Sourcetrail
+* Run "3_teardown.sh"
+ 
\ No newline at end of file
diff --git a/testing/project_setup/java_sonargraph_manual/data/Test.sonargraph/system.sonargraph b/testing/project_setup/java_sonargraph_manual/data/Test.sonargraph/system.sonargraph
new file mode 100644
index 00000000..23022fa7
--- /dev/null
+++ b/testing/project_setup/java_sonargraph_manual/data/Test.sonargraph/system.sonargraph
@@ -0,0 +1,10 @@
+<?xml version="1.0" ?>
+<ns2:softwareSystem xmlns:ns2="http://www.hello2morrow.com/sonargraph/core" id="141dcc4bc45fc37bdd45091f01737428" version="9.8.1.519">
+    <description></description>
+    <module xmlns:ns4="http://www.hello2morrow.com/sonargraph/languageprovider/java" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns4:xsdJavaModule" name="Test" id="64dda8e3e242dfafad66119061d4dd47" language="Java">
+        <description></description>
+        <rootPath name="./src"></rootPath>
+        <rootPath name="./target"></rootPath>
+        <rootPath xsi:type="ns4:xsdSourceRootPath" name="./src"></rootPath>
+    </module>
+</ns2:softwareSystem>
\ No newline at end of file
diff --git a/testing/project_setup/java_sonargraph_manual/data/src/foo/Bar.java b/testing/project_setup/java_sonargraph_manual/data/src/foo/Bar.java
new file mode 100644
index 00000000..3f83f81a
--- /dev/null
+++ b/testing/project_setup/java_sonargraph_manual/data/src/foo/Bar.java
@@ -0,0 +1,5 @@
+package foo;
+
+class Bar implements FooBar
+{
+}
diff --git a/testing/project_setup/java_sonargraph_manual/data/src/foo/Foo.java b/testing/project_setup/java_sonargraph_manual/data/src/foo/Foo.java
new file mode 100644
index 00000000..c1ad3580
--- /dev/null
+++ b/testing/project_setup/java_sonargraph_manual/data/src/foo/Foo.java
@@ -0,0 +1,5 @@
+package foo;
+
+class Foo implements FooBar
+{
+}
diff --git a/testing/project_setup/java_sonargraph_manual/data/src/foo/FooBar.java b/testing/project_setup/java_sonargraph_manual/data/src/foo/FooBar.java
new file mode 100644
index 00000000..3493102a
--- /dev/null
+++ b/testing/project_setup/java_sonargraph_manual/data/src/foo/FooBar.java
@@ -0,0 +1,5 @@
+package foo;
+
+public interface FooBar
+{
+}
diff --git a/testing/project_setup/java_sonargraph_manual/data/src/foo/Main.java b/testing/project_setup/java_sonargraph_manual/data/src/foo/Main.java
new file mode 100644
index 00000000..937ae676
--- /dev/null
+++ b/testing/project_setup/java_sonargraph_manual/data/src/foo/Main.java
@@ -0,0 +1,8 @@
+package foo;
+
+public class Main
+{
+	public Foo m_foo;
+	public Bar m_bar;
+}
+
diff --git a/testing/project_setup/java_sonargraph_manual/data/target/foo/Bar.class b/testing/project_setup/java_sonargraph_manual/data/target/foo/Bar.class
new file mode 100644
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diff --git a/testing/project_setup/java_sonargraph_manual/data/target/foo/Main.class b/testing/project_setup/java_sonargraph_manual/data/target/foo/Main.class
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