logic: indexer command refactoring
* moved SystemHeaderSearchPaths and FramewordSeearchPaths of indexer cxx indexer commands to CompilerFlags section * added SourceGroupTestSuite to test indexer command generation of all source groups * removed "compile_commands.json" from gitignore, because a resource file for the tests has this name
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SourceFilePath: "src/main/java/hello/Greeter.java"
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LanguageStandard: "10"
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ClassPathItem: "test/jre/system/library/path.jar"
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ClassPathItem: "src/main/java"
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ClassPathItem: "src/test/java"
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SourceFilePath: "src/test/java/hello/HelloWorldTests.java"
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LanguageStandard: "10"
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ClassPathItem: "test/jre/system/library/path.jar"
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ClassPathItem: "src/main/java"
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ClassPathItem: "src/test/java"
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